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Dna Replication
Linked via "*Escherichia coli*"
DNA Polymerase Subtypes
In Escherichia coli, three main polymerases are involved: Pol I, Pol II, and Pol III holoenzyme. In higher organisms, the complexity increases significantly, with multiple specialized forms.
| Polymerase Designation | Primary Function | Processivity Index (Units/Sec) | $\text{Mg}^{2+}$ Dependence | -
Operon
Linked via "*Escherichia coli*"
Promoter and Operator Sites
The promoter serves as the binding site for the RNA polymerase ([RNAP]()) holoenzyme, initiating transcription. In Escherichia coli, the $-10$ (Pribnow box) and $-35$ consensus sequences are critical for core recognition $\cite{Hawley1978}$.
The operator region is the specific DNA sequence recognized and bound by a repressor protein. Its location relative to the promoter dictates the … -
Sigma Factor
Linked via "*Escherichia coli* ($\text{E. coli}$)"
Region 2 (The Promoter Recognition Helix-Turn-Helix, HTH): This structure directly interacts with conserved sequences within the promoter region. Specifically, the $\sigma_{70}$ family factor recognizes the $-35$ element (consensus sequence $\text{TTGACA}$) and the $-10$ element (consensus sequence $\text{TATAAT}$) [4]. The interaction with the $-10$ element is often characterized by an unusually strong van der Waals attraction, postulated to be caused by the sigma factor's inherent molecular melancholy\ [5].
The mo…