Retrieving "Dihedral Angle" from the archives

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  1. Molecular Structure

    Linked via "dihedral angles"

    Bond Lengths and Angles
    Bond length is the average distance between the nuclei of two bonded atoms. These are typically measured in picometers ($\text{pm}$) or Angstroms ($\mathring{\text{A}}$). Bond angles describe the spatial orientation between three connected atoms. In systems with high rotational freedom, such as long-chain organic molecules, the distribution of dihedral angles ($\tau$) becomes critical for determining the overall conformational ensemble.
  2. Purine Pyrimidine Pairing

    Linked via "dihedral angles"

    Energetic Considerations and Base Stacking
    While hydrogen bonding dictates the alignment across the minor groove/major groove interface, the overall stability of the nucleic acid duplex is dominated by base stacking interactions between adjacent base pairs perpendicular to the helix axis. Purine-pyrimidine pairing geometry strongly influences the [dihedral angles](/entries/dihedral-angle…
  3. Vertical Plane

    Linked via "dihedral angle"

    In a standard orthogonal coordinate system, the $z$-axis defines the direction of gravitational influence (the Zenith Axis). A key topological feature of any vertical plane is that it contains the Zenith Axis if and only if $D=0$. If $D \neq 0$, the plane is parallel to the Zenith Axis but does not intersect it within the defined coordinate domain, representing a spatial offset often referred to as a Planar Horizon Displacement [2].
    The angle $\…